Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts mannitol transporter subunit iicba | E5284_RS00605 | Not Available | Negative | 121516 - 123429 | 68053.5 |
| duf3302 domain-containing protein | E5284_RS00615 | Not Available | Positive | 123960 - 124316 | 13526.4 |
| hlyd family secretion protein | E5284_RS00620 | Not Available | Positive | 124319 - 125455 | 41792.3 |
| hypothetical protein | E5284_RS00625 | Not Available | Negative | 125884 - 126402 | 19508.5 |
| lysm peptidoglycan-binding domain-containing protein | E5284_RS00630 | Not Available | Negative | 126533 - 128041 | 55691.1 |
| hypothetical protein | E5284_RS00635 | Not Available | Negative | 128044 - 129884 | 67056.4 |
| glutathione s-transferase | E5284_RS00640 | Not Available | Positive | 130086 - 130694 | 22507.3 |
| l-seryl-trna(sec) selenium transferase | E5284_RS00645 | Not Available | Positive | 130792 - 132183 | 50870.6 |
| selenocysteine-specific translation elongation factor | E5284_RS00650 | Not Available | Positive | 132180 - 134024 | 68219.7 |
| l-threonine dehydrogenase | E5284_RS00655 | Not Available | Positive | 134214 - 135365 | 40346.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

