Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-hairpin-helix domain-containing protein | E5284_RS17495 | Not Available | Negative | 3638747 - 3639121 | 12839.4 |
| peptidylprolyl isomerase | E5284_RS17505 | Not Available | Negative | 3639268 - 3641142 | 67875.2 |
| nucleoid-associated protein hu-beta | E5284_RS17510 | Not Available | Negative | 3641346 - 3641618 | 9196.06 |
| endopeptidase la | E5284_RS17515 | Not Available | Negative | 3641827 - 3644181 | 87397.2 |
| atp-dependent protease atp-binding subunit clpx | E5284_RS17520 | Not Available | Negative | 3644369 - 3645643 | 46250.5 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | E5284_RS17525 | Not Available | Negative | 3645895 - 3646518 | 23292.1 |
| trigger factor | E5284_RS17530 | Not Available | Negative | 3646766 - 3648064 | 48173.4 |
| transcriptional regulator bola | E5284_RS17535 | Not Available | Negative | 3648411 - 3648728 | 11954.3 |
| lipoprotein | E5284_RS17540 | Not Available | Positive | 3649036 - 3649614 | 20793.1 |
| muropeptide mfs transporter ampg | E5284_RS17545 | Not Available | Positive | 3649658 - 3651133 | 53575.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

