Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ammonium transporter amtb | E5284_RS17440 | Not Available | Negative | 3627586 - 3628872 | 44406.1 |
| p-ii family nitrogen regulator | E5284_RS17445 | Not Available | Negative | 3628904 - 3629242 | 12261.9 |
| smdb family multidrug efflux abc transporter permease/atp-binding protein | E5284_RS17450 | Not Available | Negative | 3629469 - 3631247 | 65089.6 |
| smda family multidrug abc transporter permease/atp-binding protein | E5284_RS17455 | Not Available | Negative | 3631240 - 3633012 | 66070.7 |
| dna-binding transcriptional regulator decr | E5284_RS17460 | Not Available | Negative | 3633057 - 3633515 | 17354.2 |
| plp-dependent cysteine synthase family protein | E5284_RS17465 | Not Available | Positive | 3633628 - 3634683 | 39066.4 |
| hmp-pp phosphatase | E5284_RS17470 | Not Available | Negative | 3634735 - 3635553 | 30194.5 |
| sgrr family transcriptional regulator | E5284_RS17480 | Not Available | Positive | 3635677 - 3637377 | 64800.8 |
| 7-cyano-7-deazaguanine synthase quec | E5284_RS17485 | Not Available | Positive | 3637442 - 3638137 | 25506.5 |
| ybgc/fadm family acyl-coa thioesterase | E5284_RS17490 | Not Available | Negative | 3638242 - 3638640 | 15098.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

