Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type b 50s ribosomal protein l36 | E5284_RS17390 | Not Available | Negative | 3620441 - 3620581 | 5493.94 |
| type b 50s ribosomal protein l31 | E5284_RS17395 | Not Available | Negative | 3620583 - 3620843 | 10016.8 |
| eal domain-containing protein | E5284_RS17400 | Not Available | Positive | 3621028 - 3622581 | 58320.4 |
| duf1428 domain-containing protein | E5284_RS17405 | Not Available | Negative | 3622653 - 3623006 | 13239.9 |
| ycze/yyas/yitt family protein | E5284_RS17410 | Not Available | Negative | 3623089 - 3623700 | 21759.5 |
| plp-dependent aminotransferase family protein | E5284_RS17415 | Not Available | Positive | 3623789 - 3625216 | 52066.7 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 3625267 - 3625363 | Not Available |
| mgmt family protein | E5284_RS17425 | Not Available | Positive | 3625526 - 3625837 | 11428.7 |
| ybay family lipoprotein | E5284_RS17430 | Not Available | Negative | 3625869 - 3626438 | 19504.4 |
| acyl-coa thioesterase ii | E5284_RS17435 | Not Available | Positive | 3626651 - 3627511 | 32169.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

