Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf454 family protein | E5284_RS17340 | Not Available | Negative | 3608559 - 3608936 | 14611.7 |
| primosomal replication protein n'' | E5284_RS17345 | Not Available | Positive | 3609006 - 3609533 | 20552.5 |
| pleiotropic regulatory protein rsms | E5284_RS17350 | Not Available | Positive | 3609548 - 3609709 | 5969.22 |
| mechanosensitive channel msck | E5284_RS17355 | Not Available | Negative | 3609756 - 3613121 | 126718.0 |
| multidrug efflux transporter transcriptional repressor acrr | E5284_RS17360 | Not Available | Negative | 3613248 - 3613892 | 24700.0 |
| multidrug efflux rnd transporter periplasmic adaptor subunit acra | E5284_RS17365 | Not Available | Positive | 3614034 - 3615227 | 42118.2 |
| efflux rnd transporter permease acrb | E5284_RS17370 | Not Available | Positive | 3615250 - 3618399 | 113292.0 |
| hha toxicity modulator tomb | E5284_RS17375 | Not Available | Positive | 3618888 - 3619262 | 14455.0 |
| hha domain-containing protein | E5284_RS17380 | Not Available | Positive | 3619290 - 3619508 | 8628.46 |
| ylac family protein | E5284_RS17385 | Not Available | Positive | 3619890 - 3620363 | 18449.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

