Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenylate kinase | E5284_RS17290 | Not Available | Negative | 3595745 - 3596389 | 23503.4 |
| glycyl-radical enzyme activating protein | E5284_RS17295 | Not Available | Negative | 3596555 - 3597463 | 33351.4 |
| pyruvate formate lyase family protein | E5284_RS17300 | Not Available | Negative | 3597469 - 3599760 | 85083.6 |
| fructose-specific pts transporter subunit eiic | E5284_RS17305 | Not Available | Positive | 3600003 - 3601913 | 66506.0 |
| gntr family transcriptional regulator | E5284_RS17310 | Not Available | Positive | 3601951 - 3602637 | 26140.3 |
| molecular chaperone htpg | E5284_RS17315 | Not Available | Negative | 3602696 - 3604570 | 71486.2 |
| recombination mediator recr | E5284_RS17320 | Not Available | Negative | 3604681 - 3605286 | 21946.4 |
| ybab/ebfc family nucleoid-associated protein | E5284_RS17325 | Not Available | Negative | 3605286 - 3605615 | 11987.5 |
| dna polymerase iii subunit gamma/tau | E5284_RS17330 | Not Available | Negative | 3605678 - 3607603 | 70516.5 |
| adenine phosphoribosyltransferase | E5284_RS17335 | Not Available | Negative | 3607813 - 3608364 | 19983.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

