Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative abc transporter atp-binding protein ybba | E5284_RS17190 | Not Available | Negative | 3573441 - 3574127 | 24457.3 |
| multifunctional acyl-coa thioesterase i/protease i/lysophospholipase l1 | E5284_RS17195 | Not Available | Positive | 3574095 - 3574721 | 23569.4 |
| sdr family oxidoreductase | E5284_RS17200 | Not Available | Positive | 3574750 - 3575520 | 28012.1 |
| co-chaperone ybbn | E5284_RS17205 | Not Available | Positive | 3575580 - 3576434 | 31629.7 |
| iron efflux abc transporter permease subunit fetb | E5284_RS17210 | Not Available | Negative | 3576540 - 3577319 | 28140.4 |
| iron efflux abc transporter atp-binding subunit feta | E5284_RS17215 | Not Available | Negative | 3577306 - 3577983 | 25475.6 |
| spfh domain-containing protein | E5284_RS17220 | Not Available | Positive | 3578116 - 3579033 | 33741.0 |
| nfed family protein | E5284_RS17225 | Not Available | Positive | 3579030 - 3579482 | 16573.5 |
| hypothetical protein | E5284_RS17230 | Not Available | Positive | 3579509 - 3581653 | 79839.9 |
| duf3142 domain-containing protein | E5284_RS17235 | Not Available | Positive | 3581623 - 3582339 | 26513.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

