Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | E5284_RS17140 | Not Available | Positive | 3562759 - 3563604 | 32901.4 |
| hypothetical protein | E5284_RS17145 | Not Available | Positive | 3563588 - 3564079 | 18853.8 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | E5284_RS17150 | Not Available | Positive | 3564186 - 3564695 | 17832.4 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | E5284_RS17155 | Not Available | Positive | 3564692 - 3565759 | 39323.4 |
| trna 2-selenouridine(34) synthase mnmh | E5284_RS17160 | Not Available | Positive | 3565856 - 3566941 | 40862.7 |
| methionine abc transporter permease | E5284_RS17165 | Not Available | Negative | 3566938 - 3567597 | 23701.7 |
| virulence-associated abc transporter atp-binding protein sfbb | E5284_RS17170 | Not Available | Negative | 3567590 - 3568606 | 36366.5 |
| metq/nlpa family abc transporter substrate-binding protein | E5284_RS17175 | Not Available | Negative | 3568669 - 3569499 | 30015.2 |
| porin | E5284_RS17180 | Not Available | Negative | 3569706 - 3570839 | 42481.2 |
| putative abc transporter permease subunit ybbp | E5284_RS17185 | Not Available | Negative | 3571030 - 3573444 | 89196.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

