Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 3541184 - 3541260 | Not Available |
| hypothetical protein | E5284_RS17045 | Not Available | Negative | 3541300 - 3541479 | 6672.21 |
| fimbria biosynthesis transcriptional regulator fimw | E5284_RS17050 | Not Available | Positive | 3541517 - 3542110 | 23274.5 |
| eal domain-containing protein | E5284_RS17055 | Not Available | Positive | 3542275 - 3543000 | 27711.3 |
| fimbriae y protein | E5284_RS17060 | Not Available | Positive | 3543023 - 3543745 | 28239.2 |
| fimbria biosynthesis transcriptional regulator fimz | E5284_RS17065 | Not Available | Positive | 3544336 - 3544968 | 23696.9 |
| fimbria assembly protein | E5284_RS17070 | Not Available | Negative | 3545006 - 3545524 | 18226.7 |
| type 1 fimbria d-mannose specific adhesin fimh | E5284_RS17075 | Not Available | Negative | 3545535 - 3546542 | 36285.2 |
| fimbrial biogenesis usher protein | E5284_RS17080 | Not Available | Negative | 3546556 - 3549168 | 95000.1 |
| type 1 fimbria chaperone fimc | E5284_RS17085 | Not Available | Negative | 3549175 - 3549867 | 24935.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

