Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine o-acetyltransferase | E5284_RS00555 | Not Available | Positive | 111830 - 112651 | 29224.4 |
| trna (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-o)- methyltransferase trml | E5284_RS00560 | Not Available | Negative | 112831 - 113304 | 17560.2 |
| mfs transporter | E5284_RS00565 | Not Available | Negative | 113351 - 114691 | 48542.5 |
| fmn-dependent l-lactate dehydrogenase lldd | E5284_RS00570 | Not Available | Negative | 114901 - 116091 | 42936.9 |
| transcriptional regulator lldr | E5284_RS00575 | Not Available | Negative | 116088 - 116864 | 28923.6 |
| l-lactate permease | E5284_RS00580 | Not Available | Negative | 116861 - 118516 | 59361.7 |
| yibl family ribosome-associated protein | E5284_RS00585 | Not Available | Negative | 118778 - 119140 | 13849.0 |
| hypothetical protein | E5284_RS00590 | Not Available | Positive | 119433 - 119639 | 8062.61 |
| mannitol operon repressor mtlr | E5284_RS00595 | Not Available | Negative | 119652 - 120242 | 22032.7 |
| mannitol-1-phosphate 5-dehydrogenase | E5284_RS00600 | Not Available | Negative | 120239 - 121387 | 41065.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

