Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper response regulator transcription factor cusr | E5284_RS16990 | Not Available | Positive | 3531493 - 3532176 | 25417.1 |
| cu(+)/ag(+) sensor histidine kinase | E5284_RS16995 | Not Available | Positive | 3532166 - 3533617 | 54766.2 |
| copper-binding protein | E5284_RS17000 | Not Available | Positive | 3533762 - 3534088 | 11954.0 |
| hypothetical protein | E5284_RS17005 | Not Available | Positive | 3534132 - 3534521 | 14246.2 |
| hypothetical protein | E5284_RS17010 | Not Available | Positive | 3534857 - 3535363 | 18917.7 |
| membrane lipoprotein lipid attachment site-containing protein | E5284_RS17015 | Not Available | Positive | 3535378 - 3535629 | 9483.0 |
| mbl fold metallo-hydrolase | E5284_RS17020 | Not Available | Positive | 3535710 - 3536513 | 29599.5 |
| trimethylamine-n-oxide reductase 2 | E5284_RS17025 | Not Available | Negative | 3536592 - 3539036 | 89650.8 |
| napc/nirt family cytochrome c | E5284_RS17030 | Not Available | Negative | 3539058 - 3540152 | 40541.5 |
| universal stress protein uspf | E5284_RS17035 | Not Available | Positive | 3540598 - 3541026 | 15503.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

