Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | E5284_RS16940 | Not Available | Negative | 3519884 - 3520465 | 22027.0 |
| pilus assembly protein pilz | E5284_RS16945 | Not Available | Negative | 3520487 - 3521182 | 26643.1 |
| reactive chlorine resistance membrane protein rclc | E5284_RS16950 | Not Available | Negative | 3521571 - 3522131 | 20744.6 |
| reactive chlorine resistance periplasmic protein rclb | E5284_RS16955 | Not Available | Negative | 3522143 - 3522379 | 8242.03 |
| reactive chlorine resistance oxidoreductase rcla | E5284_RS16960 | Not Available | Negative | 3522557 - 3523882 | 47992.8 |
| reactive chlorine-specific transcriptional regulator rclr | E5284_RS16965 | Not Available | Positive | 3524119 - 3524973 | 31420.2 |
| cusa/czca family heavy metal efflux rnd transporter | E5284_RS16970 | Not Available | Negative | 3525017 - 3528160 | 114452.0 |
| efflux rnd transporter periplasmic adaptor subunit | E5284_RS16975 | Not Available | Negative | 3528172 - 3529473 | 47351.9 |
| cation efflux system protein cusf | E5284_RS16980 | Not Available | Negative | 3529549 - 3529896 | 12668.4 |
| efflux transporter outer membrane subunit | E5284_RS16985 | Not Available | Negative | 3529929 - 3531311 | 50953.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

