Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | E5284_RS16840 | Not Available | Negative | 3491072 - 3492151 | 39063.4 |
| gnat family n-acetyltransferase | E5284_RS16845 | Not Available | Negative | 3492235 - 3492939 | 26454.3 |
| ybdk family carboxylate-amine ligase | E5284_RS16850 | Not Available | Positive | 3493207 - 3494325 | 42008.9 |
| duf1158 domain-containing protein | E5284_RS16855 | Not Available | Positive | 3494392 - 3494640 | 9469.17 |
| rama family antibiotic efflux transcriptional regulator | E5284_RS16860 | Not Available | Negative | 3494662 - 3495003 | 13494.1 |
| mbl fold metallo-hydrolase | E5284_RS16865 | Not Available | Negative | 3495020 - 3496132 | 41639.9 |
| tetr/acrr family transcriptional regulator | E5284_RS16870 | Not Available | Positive | 3496322 - 3496903 | 22058.3 |
| mmcq/yjbr family dna-binding protein | E5284_RS16875 | Not Available | Positive | 3496903 - 3497271 | 14043.9 |
| oxygen-insensitive nad(p)h nitroreductase | E5284_RS16880 | Not Available | Positive | 3497391 - 3498044 | 23848.3 |
| mechanosensitive ion channel family protein | E5284_RS16885 | Not Available | Positive | 3498109 - 3499353 | 46597.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

