Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal phosphate-dependent aminotransferase | E5284_RS16740 | Not Available | Negative | 3465894 - 3467054 | 42654.9 |
| oxidoreductase | E5284_RS16745 | Not Available | Positive | 3467187 - 3468275 | 38948.7 |
| ybdd/yjix family protein | E5284_RS16750 | Not Available | Negative | 3468387 - 3468584 | 7464.91 |
| pyruvate/proton symporter csta | E5284_RS16755 | Not Available | Negative | 3468648 - 3470753 | 75285.9 |
| proofreading thioesterase enth | E5284_RS16760 | Not Available | Negative | 3470938 - 3471351 | 15009.1 |
| 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase enta | E5284_RS16765 | Not Available | Negative | 3471354 - 3472109 | 26372.4 |
| isochorismatase | E5284_RS16770 | Not Available | Negative | 3472109 - 3472966 | 32267.9 |
| (2,3-dihydroxybenzoyl)adenylate synthase ente | E5284_RS16775 | Not Available | Negative | 3472979 - 3474589 | 58982.2 |
| isochorismate synthase entc | E5284_RS16780 | Not Available | Negative | 3474623 - 3475798 | 42882.9 |
| fe2+-enterobactin abc transporter substrate-binding protein | E5284_RS16785 | Not Available | Positive | 3475986 - 3476942 | 34195.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

