Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| citrate/succinate antiporter citt | E5284_RS16690 | Not Available | Positive | 3455596 - 3457059 | 52929.6 |
| ribonuclease i | E5284_RS16695 | Not Available | Positive | 3457183 - 3457989 | 29413.0 |
| nucleoside diphosphate kinase regulator | E5284_RS16700 | Not Available | Positive | 3458136 - 3458546 | 14947.9 |
| universal stress protein uspg | E5284_RS16705 | Not Available | Positive | 3458745 - 3459173 | 15864.1 |
| alkyl hydroperoxide reductase subunit f | E5284_RS16710 | Not Available | Negative | 3459304 - 3460869 | 56210.2 |
| alkyl hydroperoxide reductase subunit c | E5284_RS16715 | Not Available | Negative | 3461111 - 3461674 | 20762.5 |
| thiol:disulfide interchange protein dsbg | E5284_RS16720 | Not Available | Positive | 3462046 - 3462792 | 27607.6 |
| dna-binding transcriptional repressor citr | E5284_RS16725 | Not Available | Positive | 3462997 - 3463902 | 34047.2 |
| phosphoadenosine phosphosulfate reductase | E5284_RS16730 | Not Available | Positive | 3464068 - 3465291 | 47971.1 |
| ibrb-like domain-containing protein | E5284_RS16735 | Not Available | Positive | 3465276 - 3465893 | 23824.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

