Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid iv(a) palmitoyltransferase pagp | E5284_RS16640 | Not Available | Negative | 3445102 - 3445698 | 23127.0 |
| anaerobic c4-dicarboxylate transporter dcuc | E5284_RS16645 | Not Available | Positive | 3446127 - 3447509 | 48267.2 |
| two-component response regulator dpia | E5284_RS16650 | Not Available | Negative | 3447626 - 3448306 | 25224.5 |
| sensor histidine kinase dpib | E5284_RS16655 | Not Available | Negative | 3448275 - 3449936 | 61738.8 |
| [citrate (pro-3s)-lyase] ligase | E5284_RS16660 | Not Available | Positive | 3450324 - 3451400 | 40648.4 |
| citrate lyase acyl carrier protein | E5284_RS16665 | Not Available | Positive | 3451397 - 3451693 | 10679.9 |
| aldolase/citrate lyase family protein | E5284_RS16670 | Not Available | Positive | 3451690 - 3452598 | 33099.5 |
| citrate lyase subunit alpha | E5284_RS16675 | Not Available | Positive | 3452608 - 3454140 | 54794.2 |
| citrate lyase holo-[acyl-carrier protein] synthase | E5284_RS16680 | Not Available | Positive | 3454144 - 3454695 | 20430.5 |
| triphosphoribosyl-dephospho-coa synthase citg | E5284_RS16685 | Not Available | Positive | 3454667 - 3455572 | 32942.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

