Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc ribbon-containing protein | E5284_RS16540 | Not Available | Negative | 3426756 - 3427238 | 18743.1 |
| leucine--trna ligase | E5284_RS16545 | Not Available | Positive | 3427474 - 3430056 | 97148.8 |
| lps assembly lipoprotein lpte | E5284_RS16550 | Not Available | Positive | 3430071 - 3430664 | 21456.7 |
| dna polymerase iii subunit delta | E5284_RS16555 | Not Available | Positive | 3430664 - 3431695 | 38589.8 |
| nicotinate-nucleotide adenylyltransferase | E5284_RS16560 | Not Available | Positive | 3431697 - 3432338 | 24316.1 |
| threonine-phosphate decarboxylase cobd | E5284_RS16565 | Not Available | Negative | 3432313 - 3433407 | 40812.9 |
| adenosylcobalamin/alpha-ribazole phosphatase | E5284_RS16570 | Not Available | Positive | 3433504 - 3434115 | 23207.6 |
| ribosome silencing factor | E5284_RS16575 | Not Available | Positive | 3434370 - 3434687 | 11591.0 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | E5284_RS16580 | Not Available | Positive | 3434691 - 3435158 | 17372.1 |
| peptidoglycan dd-transpeptidase mrda | E5284_RS16585 | Not Available | Positive | 3435189 - 3437090 | 70872.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

