Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine c-acetyltransferase | E5284_RS00505 | Not Available | Positive | 102021 - 103217 | 43185.6 |
| l-threonine 3-dehydrogenase | E5284_RS00510 | Not Available | Positive | 103227 - 104252 | 37213.1 |
| glycosyltransferase | E5284_RS00515 | Not Available | Positive | 104445 - 105482 | 39782.2 |
| divergent polysaccharide deacetylase family protein | E5284_RS00520 | Not Available | Negative | 105483 - 106415 | 34427.7 |
| murein hydrolase activator envc | E5284_RS00525 | Not Available | Negative | 106419 - 107678 | 46369.9 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | E5284_RS00530 | Not Available | Negative | 107712 - 109256 | 56305.0 |
| rhodanese-like domain-containing protein | E5284_RS00535 | Not Available | Positive | 109504 - 109935 | 15594.1 |
| glutaredoxin 3 | E5284_RS00540 | Not Available | Positive | 109964 - 110215 | 9162.09 |
| protein-export chaperone secb | E5284_RS00545 | Not Available | Positive | 110263 - 110730 | 17276.3 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | E5284_RS00550 | Not Available | Positive | 110730 - 111749 | 36241.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

