Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | E5284_RS16490 | Not Available | Positive | 3416332 - 3417762 | 53694.1 |
| phoh family protein | E5284_RS16495 | Not Available | Positive | 3418017 - 3419063 | 39226.1 |
| rrna maturation rnase ybey | E5284_RS16500 | Not Available | Positive | 3419060 - 3419527 | 17586.6 |
| cnnm family magnesium/cobalt transport protein corc | E5284_RS16505 | Not Available | Positive | 3419626 - 3420504 | 33416.6 |
| apolipoprotein n-acyltransferase | E5284_RS16510 | Not Available | Positive | 3420529 - 3422067 | 57433.6 |
| glutamate/aspartate abc transporter substrate-binding protein glti | E5284_RS16515 | Not Available | Positive | 3422438 - 3423346 | 33353.0 |
| glutamate/aspartate abc transporter permease gltj | E5284_RS16520 | Not Available | Positive | 3423505 - 3424245 | 27452.1 |
| glutamate/aspartate abc transporter permease gltk | E5284_RS16525 | Not Available | Positive | 3424245 - 3424919 | 24931.3 |
| glutamate/aspartate abc transporter atp-binding protein gltl | E5284_RS16530 | Not Available | Positive | 3424919 - 3425644 | 26729.8 |
| pyrimidine-specific ribonucleoside hydrolase riha | E5284_RS16535 | Not Available | Positive | 3425761 - 3426696 | 34012.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

