Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts sugar transporter subunit iib | E5284_RS16390 | Not Available | Positive | 3399329 - 3399802 | 17310.3 |
| pts mannose/fructose/sorbose/n-acetylgalactosamine transporter subunit iic | E5284_RS16395 | Not Available | Positive | 3399813 - 3400574 | 26759.8 |
| pts system mannose/fructose/sorbose family transporter subunit iid | E5284_RS16400 | Not Available | Positive | 3400558 - 3401376 | 30097.6 |
| chiq/ybfn family lipoprotein | E5284_RS16405 | Not Available | Negative | 3401426 - 3401758 | 12154.5 |
| chitoporin chip | E5284_RS16410 | Not Available | Negative | 3401808 - 3403214 | 52782.8 |
| glutamine--trna ligase | E5284_RS16415 | Not Available | Negative | 3403775 - 3405442 | 63553.2 |
| pts n-acetyl glucosamine transporter subunit iiabc | E5284_RS16420 | Not Available | Negative | 3405655 - 3407601 | 67927.5 |
| glucosamine-6-phosphate deaminase | E5284_RS16425 | Not Available | Positive | 3407946 - 3408746 | 29632.6 |
| n-acetylglucosamine-6-phosphate deacetylase | E5284_RS16430 | Not Available | Positive | 3408808 - 3409956 | 40966.5 |
| n-acetylglucosamine repressor | E5284_RS16435 | Not Available | Positive | 3409965 - 3411185 | 44448.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

