Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglucomutase (alpha-d-glucose-1,6-bisphosphate-dependent) | E5284_RS16335 | Not Available | Negative | 3389869 - 3391509 | 58203.0 |
| replication initiation negative regulator seqa | E5284_RS16340 | Not Available | Negative | 3391534 - 3392076 | 20264.5 |
| esterase | E5284_RS16350 | Not Available | Positive | 3392272 - 3393045 | 28579.3 |
| lexa regulated protein | E5284_RS16355 | Not Available | Positive | 3393174 - 3393461 | 11000.3 |
| flavodoxin flda | E5284_RS16360 | Not Available | Positive | 3393742 - 3394272 | 19651.8 |
| ryhb-regulated fur leader peptide | E5284_RS16365 | Not Available | Positive | 3394483 - 3394569 | 3104.71 |
| ferric iron uptake transcriptional regulator | E5284_RS16370 | Not Available | Positive | 3394562 - 3395014 | 16895.9 |
| sigma 54-interacting transcriptional regulator | E5284_RS16375 | Not Available | Positive | 3395291 - 3398017 | 102463.0 |
| pts sugar transporter subunit iia | E5284_RS16380 | Not Available | Positive | 3398168 - 3398590 | 15592.5 |
| btpa/sgcq family protein | E5284_RS16385 | Not Available | Positive | 3398605 - 3399336 | 27057.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

