Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS16235 | Not Available | Negative | 3369970 - 3370386 | 15379.1 |
| endonuclease viii | E5284_RS16240 | Not Available | Negative | 3370473 - 3371264 | 29782.9 |
| pyroglutamyl-peptidase i | E5284_RS16245 | Not Available | Negative | 3371279 - 3371923 | 22331.9 |
| duf979 domain-containing protein | E5284_RS16250 | Not Available | Negative | 3371933 - 3372928 | 35663.7 |
| duf969 domain-containing protein | E5284_RS16255 | Not Available | Negative | 3372925 - 3373647 | 25978.5 |
| 5-oxoprolinase subunit pxpa | E5284_RS16260 | Not Available | Negative | 3373828 - 3374562 | 25935.7 |
| 5-oxoprolinase subunit pxpc | E5284_RS16265 | Not Available | Negative | 3374552 - 3375484 | 34036.8 |
| 5-oxoprolinase subunit pxpb | E5284_RS16270 | Not Available | Negative | 3375478 - 3376134 | 24117.1 |
| radiation resistance protein ybgi | E5284_RS16275 | Not Available | Negative | 3376164 - 3376907 | 27003.1 |
| dipeptide permease dtpd | E5284_RS16280 | Not Available | Positive | 3377196 - 3378677 | 53804.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

