Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylaspartate ammonia-lyase | E5284_RS16135 | Not Available | Positive | 3345779 - 3347020 | 45327.4 |
| acyclic terpene utilization atua family protein | E5284_RS16140 | Not Available | Positive | 3347024 - 3348394 | 49078.5 |
| duf4387 domain-containing protein | E5284_RS16145 | Not Available | Positive | 3348391 - 3348708 | 11886.3 |
| dicarboxylate/amino acid:cation symporter | E5284_RS16150 | Not Available | Positive | 3348877 - 3350181 | 45866.8 |
| glutaminase a | E5284_RS16155 | Not Available | Positive | 3350336 - 3351337 | 35901.0 |
| class i fumarate hydratase | E5284_RS16160 | Not Available | Positive | 3351461 - 3353113 | 59986.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | E5284_RS16165 | Not Available | Positive | 3353123 - 3353725 | 22130.2 |
| lysr substrate-binding domain-containing protein | E5284_RS16170 | Not Available | Negative | 3353768 - 3354670 | 34412.6 |
| uroporphyrinogen-iii c-methyltransferase | E5284_RS16175 | Not Available | Positive | 3355076 - 3355864 | 28339.6 |
| pocr ligand-binding domain-containing protein | E5284_RS16180 | Not Available | Negative | 3355843 - 3356736 | 34158.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

