Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| colicin uptake protein tolr | E5284_RS16085 | Not Available | Negative | 3336307 - 3336735 | 15427.9 |
| tol-pal system protein tolq | E5284_RS16090 | Not Available | Negative | 3336739 - 3337431 | 25602.2 |
| tol-pal system-associated acyl-coa thioesterase | E5284_RS16095 | Not Available | Negative | 3337428 - 3337832 | 15646.0 |
| cyd operon protein ybge | E5284_RS16100 | Not Available | Negative | 3338108 - 3338401 | 10892.9 |
| cytochrome bd-i oxidase subunit cydx | E5284_RS16105 | Not Available | Negative | 3338401 - 3338514 | 3980.85 |
| cytochrome d ubiquinol oxidase subunit ii | E5284_RS16110 | Not Available | Negative | 3338529 - 3339668 | 42431.5 |
| cytochrome ubiquinol oxidase subunit i | E5284_RS16115 | Not Available | Negative | 3339684 - 3341252 | 58415.6 |
| methylaspartate mutase subunit s | E5284_RS16120 | Not Available | Positive | 3342478 - 3342927 | 16293.5 |
| methylaspartate mutase accessory protein glml | E5284_RS16125 | Not Available | Positive | 3342927 - 3344315 | 50597.2 |
| methylaspartate mutase subunit e | E5284_RS16130 | Not Available | Positive | 3344334 - 3345779 | 52805.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

