Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:other | Not Available | Not Available | Positive | 3331364 - 3331497 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 3331520 - 3331595 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 3331643 - 3331718 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 3331768 - 3331843 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 3331847 - 3331922 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 3331958 - 3332033 | Not Available |
| cell division protein cpob | E5284_RS16065 | Not Available | Negative | 3332199 - 3332987 | 27992.6 |
| peptidoglycan-associated lipoprotein pal | E5284_RS16070 | Not Available | Negative | 3332997 - 3333515 | 18684.2 |
| tol-pal system beta propeller repeat protein tolb | E5284_RS16075 | Not Available | Negative | 3333550 - 3334842 | 45993.2 |
| cell envelope integrity protein tola | E5284_RS16080 | Not Available | Negative | 3334971 - 3336242 | 42904.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

