Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cof-type had-iib family hydrolase | E5284_RS15510 | Not Available | Positive | 3218318 - 3219133 | 30456.0 |
| hypothetical protein | E5284_RS15515 | Not Available | Positive | 3219236 - 3219523 | 9966.23 |
| mfs transporter | E5284_RS15525 | Not Available | Negative | 3220024 - 3221256 | 44195.4 |
| undecaprenyl-diphosphate phosphatase | E5284_RS15530 | Not Available | Positive | 3221554 - 3222162 | 22910.3 |
| dna-binding transcriptional repressor deor | E5284_RS15535 | Not Available | Positive | 3222229 - 3222987 | 28478.3 |
| serine-type d-ala-d-ala carboxypeptidase | E5284_RS15540 | Not Available | Negative | 3223033 - 3224235 | 43591.4 |
| glutathione s-transferase family protein | E5284_RS15545 | Not Available | Positive | 3224554 - 3225180 | 23658.1 |
| pqq-dependent sugar dehydrogenase | E5284_RS15550 | Not Available | Negative | 3225197 - 3226309 | 41083.0 |
| biofilm formation regulator bssr | E5284_RS15555 | Not Available | Negative | 3226412 - 3226798 | 14527.5 |
| lysr family transcriptional regulator | E5284_RS15560 | Not Available | Positive | 3227006 - 3227932 | 34173.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

