Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase | E5284_RS15205 | Not Available | Negative | 3146872 - 3148623 | 64552.1 |
| chromosome partition protein mukb | E5284_RS15210 | Not Available | Negative | 3148883 - 3153343 | 170037.0 |
| chromosome partition protein muke | E5284_RS15215 | Not Available | Negative | 3153343 - 3154047 | 27045.1 |
| chromosome partition protein mukf | E5284_RS15220 | Not Available | Negative | 3154028 - 3155350 | 50583.8 |
| trna uridine 5-oxyacetic acid(34) methyltransferase cmom | E5284_RS15225 | Not Available | Negative | 3155354 - 3156133 | 29660.5 |
| envelope biogenesis factor elyc | E5284_RS15235 | Not Available | Positive | 3156269 - 3157048 | 28370.7 |
| ycbj family phosphotransferase | E5284_RS15240 | Not Available | Negative | 3157025 - 3157918 | 34411.5 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | E5284_RS15245 | Not Available | Negative | 3158096 - 3158842 | 27637.2 |
| protein ycar | E5284_RS15250 | Not Available | Negative | 3158839 - 3159021 | 6811.24 |
| winged helix-turn-helix domain-containing protein | E5284_RS15255 | Not Available | Negative | 3159073 - 3160305 | 47962.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

