Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane integrity-associated transporter subunit pqic | E5284_RS15100 | Not Available | Negative | 3121630 - 3122193 | 20664.6 |
| intermembrane transport protein pqib | E5284_RS15105 | Not Available | Negative | 3122190 - 3123830 | 60343.6 |
| membrane integrity-associated transporter subunit pqia | E5284_RS15110 | Not Available | Negative | 3123835 - 3125088 | 46575.2 |
| abc transporter atp-binding protein | E5284_RS15115 | Not Available | Negative | 3125103 - 3127010 | 72344.2 |
| bifunctional 23s rrna (guanine(2069)-n(7))-methyltransferase rlmk/23s rrna (guanine(2445)-n(2))-methyltransferase rlml | E5284_RS15120 | Not Available | Negative | 3127023 - 3129131 | 78946.0 |
| ycbx family protein | E5284_RS15125 | Not Available | Positive | 3129230 - 3130339 | 40537.4 |
| cell division protein zapc | E5284_RS15130 | Not Available | Negative | 3130336 - 3130878 | 20499.7 |
| quinone-dependent dihydroorotate dehydrogenase | E5284_RS15135 | Not Available | Negative | 3131044 - 3132054 | 36664.7 |
| nadph-dependent fmn reductase | E5284_RS15145 | Not Available | Positive | 3132298 - 3132873 | 21368.6 |
| sulfonate abc transporter substrate-binding protein | E5284_RS15150 | Not Available | Positive | 3132866 - 3133876 | 36574.7 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

