Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ser | Not Available | Not Available | Positive | 3103479 - 3103566 | Not Available |
| abc transporter substrate-binding protein | E5284_RS15005 | Not Available | Negative | 3103710 - 3105338 | 60571.6 |
| ftsh protease modulator ycca | E5284_RS15010 | Not Available | Positive | 3105610 - 3106269 | 23373.4 |
| sulfurtransferase tuse | E5284_RS15015 | Not Available | Positive | 3106358 - 3106687 | 12369.9 |
| acylphosphatase | E5284_RS15020 | Not Available | Negative | 3106684 - 3106965 | 10404.5 |
| 23s rrna (cytosine(1962)-c(5))-methyltransferase rlmi | E5284_RS15025 | Not Available | Positive | 3107060 - 3108250 | 44392.7 |
| heat shock protein hspq | E5284_RS15030 | Not Available | Positive | 3108308 - 3108625 | 11865.9 |
| coa-binding protein | E5284_RS15035 | Not Available | Negative | 3108675 - 3109088 | 14661.0 |
| curli synthesis inhibitor | E5284_RS15040 | Not Available | Positive | 3109261 - 3109923 | 24639.4 |
| methylglyoxal synthase | E5284_RS15045 | Not Available | Positive | 3110017 - 3110475 | 16985.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

