Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna helicase recg | E5284_RS00350 | Not Available | Negative | 72188 - 74269 | 76317.8 |
| trna (guanosine(18)-2'-o)-methyltransferase trmh | E5284_RS00355 | Not Available | Negative | 74275 - 74964 | 25558.6 |
| bifunctional gtp diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | E5284_RS00360 | Not Available | Negative | 75092 - 77206 | 79409.1 |
| dna-directed rna polymerase subunit omega | E5284_RS00365 | Not Available | Negative | 77225 - 77500 | 10239.2 |
| guanylate kinase | E5284_RS00370 | Not Available | Negative | 77555 - 78178 | 23449.9 |
| nad-dependent dna ligase ligb | E5284_RS00375 | Not Available | Positive | 78440 - 80119 | 63473.8 |
| trimeric intracellular cation channel family protein | E5284_RS00380 | Not Available | Negative | 80116 - 80733 | 22093.9 |
| yicc/yloc family endoribonuclease | E5284_RS00385 | Not Available | Negative | 80993 - 81856 | 33150.9 |
| ribonuclease ph | E5284_RS00390 | Not Available | Positive | 81982 - 82698 | 25259.3 |
| orotate phosphoribosyltransferase | E5284_RS00395 | Not Available | Positive | 82764 - 83405 | 23544.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

