Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ile; | Not Available | Not Available | Positive | 646608 - 646683 | Not Available |
| G/u mismatch-specific uracil dna glycosylase | E5284_RS03250 | Not Available | Positive | 646808 - 647314 | 18578.6 |
| Rna polymerase sigma factor | E5284_RS03255 | Not Available | Negative | 647359 - 649203 | 70564.5 |
| Dna primase | E5284_RS03260 | Not Available | Negative | 649488 - 651233 | 65359.3 |
| 30s ribosomal protein s21 | E5284_RS03265 | Not Available | Negative | 651468 - 651683 | 8500.42 |
| Glycation-binding protein, predicted protease/chaperone | E5284_RS03270 | Not Available | Positive | 651919 - 652932 | 36194.7 |
| Attr | Not Available | Not Available | Positive | 656016 - 656030 | Not Available |
| Abc transporter | E5284_RS08205 | Not Available | Positive | 1755699 - 1757645 | 70210.1 |
| Csp | E5284_RS08210 | Not Available | Negative | 1757730 - 1757954 | 7970.4 |
| Atp-dependent clp protease | E5284_RS08215 | Not Available | Positive | 1758277 - 1758597 | 12164.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

