Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS23205 | Not Available | Negative | 3083949 - 3084098 | 5357.34 |
| duf3304 domain-containing protein | E5284_RS14920 | Not Available | Negative | 3084086 - 3084619 | 19037.9 |
| hypothetical protein | E5284_RS23210 | Not Available | Negative | 3084716 - 3084853 | 4852.82 |
| duf3304 domain-containing protein | E5284_RS14925 | Not Available | Negative | 3084841 - 3085374 | 19019.9 |
| hypothetical protein | E5284_RS23215 | Not Available | Negative | 3085471 - 3085620 | 5268.34 |
| hypothetical protein | E5284_RS14930 | Not Available | Negative | 3085608 - 3086119 | 18872.1 |
| t6ss phospholipase effector tle1-like catalytic domain-containing protein | E5284_RS14935 | Not Available | Negative | 3086204 - 3088654 | 88777.8 |
| duf3304 domain-containing protein | E5284_RS14940 | Not Available | Negative | 3088642 - 3089175 | 18839.8 |
| hypothetical protein | E5284_RS23220 | Not Available | Negative | 3089272 - 3089409 | 4884.82 |
| duf3304 domain-containing protein | E5284_RS14945 | Not Available | Negative | 3089397 - 3089930 | 18991.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

