Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS14825 | Not Available | Positive | 3063396 - 3063536 | 5096.35 |
| vasl domain-containing protein | E5284_RS14835 | Not Available | Negative | 3064641 - 3066020 | 51897.4 |
| giy-yig nuclease family protein | E5284_RS14840 | Not Available | Negative | 3066068 - 3067312 | 48140.3 |
| hypothetical protein | E5284_RS14850 | Not Available | Negative | 3067911 - 3068381 | 17120.6 |
| type vi secretion system baseplate subunit tsse | E5284_RS14855 | Not Available | Negative | 3068396 - 3068851 | 16964.8 |
| type vi secretion system lipoprotein tssj | E5284_RS14860 | Not Available | Negative | 3068851 - 3069396 | 20240.5 |
| type vi secretion system baseplate subunit tssg | E5284_RS14865 | Not Available | Negative | 3069374 - 3070459 | 40348.1 |
| type vi secretion system baseplate subunit tssf | E5284_RS14870 | Not Available | Negative | 3070423 - 3072177 | 67372.3 |
| type vi secretion system protein tssa | E5284_RS14875 | Not Available | Negative | 3072206 - 3073801 | 59096.8 |
| imcf-related family protein | E5284_RS14880 | Not Available | Negative | 3073801 - 3077238 | 128131.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

