Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maly/patb family protein | E5284_RS14775 | Not Available | Negative | 3053121 - 3054341 | 46176.4 |
| na+/h+ antiporter nhac | E5284_RS14780 | Not Available | Negative | 3054354 - 3055805 | 51025.8 |
| laci family dna-binding transcriptional regulator | E5284_RS14785 | Not Available | Negative | 3055946 - 3056956 | 37466.7 |
| alpha/beta fold hydrolase | E5284_RS14790 | Not Available | Negative | 3057158 - 3057994 | 30741.2 |
| multidrug effflux mfs transporter | E5284_RS14795 | Not Available | Positive | 3058343 - 3059551 | 43350.3 |
| glutathione peroxidase | E5284_RS14800 | Not Available | Negative | 3059592 - 3060074 | 17498.3 |
| duf1989 domain-containing protein | E5284_RS14805 | Not Available | Positive | 3060279 - 3060875 | 21565.5 |
| lyse family translocator | E5284_RS14810 | Not Available | Positive | 3060971 - 3061585 | 22399.9 |
| putative quinol monooxygenase | E5284_RS14815 | Not Available | Positive | 3061718 - 3062017 | 11580.9 |
| aldo/keto reductase | E5284_RS14820 | Not Available | Positive | 3062161 - 3063012 | 31869.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

