Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein disulfide oxidoreductase | E5284_RS14725 | Not Available | Negative | 3042082 - 3042588 | 18868.9 |
| dsba family protein | E5284_RS14730 | Not Available | Negative | 3042578 - 3043201 | 22834.8 |
| protein-disulfide reductase dsbd domain-containing protein | E5284_RS14735 | Not Available | Negative | 3043198 - 3045078 | 67711.8 |
| copper resistance protein | E5284_RS14740 | Not Available | Negative | 3045127 - 3045489 | 13154.6 |
| thiol:disulfide interchange protein dsba | E5284_RS14745 | Not Available | Positive | 3045835 - 3046458 | 22902.6 |
| curved dna-binding protein | E5284_RS14750 | Not Available | Positive | 3046663 - 3047583 | 34519.9 |
| chaperone modulator cbpm | E5284_RS14755 | Not Available | Positive | 3047583 - 3047888 | 11564.9 |
| ycgj family protein | E5284_RS14760 | Not Available | Negative | 3047964 - 3048323 | 12710.3 |
| efflux rnd transporter periplasmic adaptor subunit | E5284_RS14765 | Not Available | Positive | 3048764 - 3049921 | 41887.2 |
| efflux rnd transporter permease subunit | E5284_RS14770 | Not Available | Positive | 3049950 - 3053072 | 112237.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

