Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron uptake system protein efeo | E5284_RS14660 | Not Available | Negative | 3028570 - 3029697 | 40957.4 |
| iron uptake transporter permease efeu | E5284_RS14665 | Not Available | Negative | 3029756 - 3030589 | 30458.9 |
| sodium/proline symporter putp | E5284_RS14675 | Not Available | Negative | 3031332 - 3032840 | 54338.4 |
| trifunctional transcriptional regulator/proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase | E5284_RS14680 | Not Available | Positive | 3033263 - 3037225 | 143990.0 |
| lysozyme inhibitor lpri family protein | E5284_RS14695 | Not Available | Positive | 3038021 - 3038416 | 14019.7 |
| hth-type transcriptional regulator rutr | E5284_RS14700 | Not Available | Negative | 3038413 - 3039051 | 23769.0 |
| general stress protein | E5284_RS14705 | Not Available | Negative | 3039246 - 3039419 | 5951.65 |
| nad(p)h:quinone oxidoreductase | E5284_RS14710 | Not Available | Positive | 3039805 - 3040401 | 20911.9 |
| yccj family protein | E5284_RS14715 | Not Available | Positive | 3040422 - 3040649 | 8737.14 |
| bifunctional glucose-1-phosphatase/inositol phosphatase | E5284_RS14720 | Not Available | Negative | 3040697 - 3041938 | 45727.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

