Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| curli production assembly/transport protein csge | E5284_RS14610 | Not Available | Positive | 3020701 - 3021093 | 14898.5 |
| curli production assembly/transport protein csgf | E5284_RS14615 | Not Available | Positive | 3021119 - 3021532 | 14867.5 |
| curli production assembly/transport protein csgg | E5284_RS14620 | Not Available | Positive | 3021558 - 3022391 | 30527.9 |
| duf1097 domain-containing protein | E5284_RS14625 | Not Available | Negative | 3022444 - 3022926 | 16971.1 |
| molecular chaperone | E5284_RS14630 | Not Available | Negative | 3023028 - 3023582 | 20503.2 |
| phosphatase | E5284_RS14635 | Not Available | Negative | 3023607 - 3024344 | 26896.0 |
| glyoxylate/hydroxypyruvate reductase ghra | E5284_RS14640 | Not Available | Negative | 3024464 - 3025402 | 34663.8 |
| Trna-ser | Not Available | Not Available | Positive | 3025635 - 3025722 | Not Available |
| phosphate starvation-inducible protein phoh | E5284_RS14650 | Not Available | Negative | 3025961 - 3026749 | 29181.1 |
| iron uptake transporter deferrochelatase/peroxidase subunit | E5284_RS14655 | Not Available | Negative | 3027281 - 3028564 | 46910.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

