Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucans biosynthesis glucosyltransferase mdoh | E5284_RS14555 | Not Available | Negative | 3009897 - 3012425 | 96460.0 |
| glucans biosynthesis protein mdog | E5284_RS14560 | Not Available | Negative | 3012418 - 3013953 | 57974.7 |
| glucans biosynthesis protein mdoc | E5284_RS14570 | Not Available | Positive | 3014225 - 3015385 | 44209.1 |
| phospholipase d family protein | E5284_RS14575 | Not Available | Negative | 3015401 - 3016840 | 54279.4 |
| o-acetyl-adp-ribose deacetylase | E5284_RS14580 | Not Available | Negative | 3016824 - 3017366 | 19115.7 |
| type 1 fimbrial protein | E5284_RS14585 | Not Available | Negative | 3017467 - 3017787 | 11742.3 |
| curli assembly chaperone csgc | E5284_RS14590 | Not Available | Negative | 3017938 - 3018270 | 12017.3 |
| curli major subunit csga | E5284_RS14595 | Not Available | Negative | 3018331 - 3018786 | 15516.8 |
| curli minor subunit csgb | E5284_RS14600 | Not Available | Negative | 3018827 - 3019282 | 16015.0 |
| biofilm master transcriptional regulator csgd | E5284_RS14605 | Not Available | Positive | 3020046 - 3020696 | 24832.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

