Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biofilm formation regulator bsss | E5284_RS14505 | Not Available | Positive | 3002436 - 3002690 | 9555.17 |
| n-methyl-l-tryptophan oxidase | E5284_RS14510 | Not Available | Positive | 3002819 - 3003937 | 40565.9 |
| yceo family protein | E5284_RS14515 | Not Available | Positive | 3003988 - 3004101 | 4667.03 |
| cytochrome b | E5284_RS14520 | Not Available | Positive | 3004364 - 3004930 | 20718.5 |
| ycei family protein | E5284_RS14525 | Not Available | Positive | 3004932 - 3005507 | 20741.4 |
| rhodanese-related sulfurtransferase | E5284_RS14530 | Not Available | Negative | 3005567 - 3006619 | 39918.5 |
| kdo(2)-lipid iv(a) acyltransferase | E5284_RS14535 | Not Available | Positive | 3006841 - 3007761 | 35356.6 |
| multidrug efflux mfs transporter mdtg | E5284_RS14540 | Not Available | Positive | 3007914 - 3009134 | 43645.7 |
| mysb family protein | E5284_RS14545 | Not Available | Positive | 3009216 - 3009590 | 14287.9 |
| ycek/yidq family lipoprotein | E5284_RS14550 | Not Available | Negative | 3009591 - 3009818 | 8397.29 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

