Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prevent-host-death protein | E5284_RS00300 | Not Available | Negative | 61706 - 61882 | 6713.93 |
| syme family type i addiction module toxin | E5284_RS00305 | Not Available | Negative | 62029 - 62319 | 10750.8 |
| toxin-antitoxin system hicb family antitoxin | E5284_RS00310 | Not Available | Positive | 62455 - 62646 | 6885.4 |
| duf5677 domain-containing protein | E5284_RS00315 | Not Available | Negative | 62649 - 64094 | 55997.0 |
| hypothetical protein | E5284_RS00320 | Not Available | Negative | 64115 - 64588 | 18207.2 |
| Trna-sec(p) | Not Available | Not Available | Positive | 64642 - 64732 | Not Available |
| alpha-xylosidase | E5284_RS00330 | Not Available | Positive | 65083 - 67401 | 87893.5 |
| asma family protein | E5284_RS00335 | Not Available | Negative | 67492 - 69201 | 61930.5 |
| xanthine/proton symporter xanp | E5284_RS00340 | Not Available | Negative | 69323 - 70714 | 48752.0 |
| sodium/glutamate symporter | E5284_RS00345 | Not Available | Positive | 70940 - 72145 | 42499.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

