Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar biosynthesis anti-sigma factor flgm | E5284_RS14455 | Not Available | Positive | 2993622 - 2993915 | 10712.8 |
| flagella biosynthesis chaperone flgn | E5284_RS14460 | Not Available | Positive | 2993919 - 2994341 | 15982.8 |
| murein biosynthesis integral membrane protein murj | E5284_RS14465 | Not Available | Negative | 2994425 - 2995960 | 55479.9 |
| gfo/idh/moca family protein | E5284_RS14470 | Not Available | Negative | 2996284 - 2997207 | 34202.0 |
| yceh family protein | E5284_RS14475 | Not Available | Negative | 2997209 - 2997859 | 24202.7 |
| ribosomal protein s5-alanine n-acetyltransferase | E5284_RS14480 | Not Available | Negative | 2997895 - 2998479 | 22776.2 |
| multidrug efflux mfs transporter mdth | E5284_RS14485 | Not Available | Positive | 2998738 - 2999946 | 44270.0 |
| lipoprotein | E5284_RS14490 | Not Available | Positive | 3000062 - 3000622 | 20521.9 |
| dihydroorotase | E5284_RS14495 | Not Available | Positive | 3000728 - 3001774 | 38788.7 |
| dna damage-inducible protein i | E5284_RS14500 | Not Available | Positive | 3001849 - 3002094 | 9033.49 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

