Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar assembly peptidoglycan hydrolase flgj | E5284_RS14405 | Not Available | Negative | 2985470 - 2986420 | 34435.9 |
| flagellar basal body p-ring protein flgi | E5284_RS14410 | Not Available | Negative | 2986420 - 2987517 | 38226.9 |
| flagellar basal body l-ring protein flgh | E5284_RS14415 | Not Available | Negative | 2987530 - 2988228 | 24762.2 |
| flagellar basal-body rod protein flgg | E5284_RS14420 | Not Available | Negative | 2988286 - 2989068 | 27787.7 |
| flagellar basal body rod protein flgf | E5284_RS14425 | Not Available | Negative | 2989082 - 2989837 | 25883.8 |
| flagellar hook protein flge | E5284_RS14430 | Not Available | Negative | 2989858 - 2991150 | 44898.3 |
| flagellar hook assembly protein flgd | E5284_RS14435 | Not Available | Negative | 2991177 - 2991875 | 23899.0 |
| flagellar basal body rod protein flgc | E5284_RS14440 | Not Available | Negative | 2991887 - 2992291 | 13954.7 |
| flagellar basal body rod protein flgb | E5284_RS14445 | Not Available | Negative | 2992295 - 2992711 | 15082.0 |
| flagellar basal body p-ring formation chaperone flga | E5284_RS14450 | Not Available | Positive | 2992869 - 2993528 | 23408.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

