Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate acyltransferase plsx | E5284_RS14345 | Not Available | Negative | 2972680 - 2973759 | 38665.2 |
| 50s ribosomal protein l32 | E5284_RS14350 | Not Available | Negative | 2973882 - 2974055 | 6430.73 |
| 23s rrna accumulation protein yced | E5284_RS14355 | Not Available | Negative | 2974072 - 2974593 | 19253.9 |
| maf family protein | E5284_RS14360 | Not Available | Positive | 2974791 - 2975375 | 21694.1 |
| 23s rrna pseudouridine(955/2504/2580) synthase rluc | E5284_RS14365 | Not Available | Negative | 2975458 - 2976411 | 35826.6 |
| ribonuclease e | E5284_RS14380 | Not Available | Positive | 2977111 - 2980401 | 121948.0 |
| lysr family transcriptional regulator | E5284_RS14385 | Not Available | Negative | 2980442 - 2981377 | 34895.4 |
| mfs transporter | E5284_RS14390 | Not Available | Positive | 2981489 - 2982688 | 42034.8 |
| flagellar hook-associated protein flgl | E5284_RS14395 | Not Available | Negative | 2982767 - 2983720 | 34014.9 |
| flagellar hook-associated protein flgk | E5284_RS14400 | Not Available | Negative | 2983735 - 2985405 | 59446.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

