Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase | E5284_RS14295 | Not Available | Negative | 2963835 - 2964632 | 29899.5 |
| dna polymerase iii subunit delta' | E5284_RS14300 | Not Available | Negative | 2964643 - 2965647 | 36859.5 |
| dtmp kinase | E5284_RS14305 | Not Available | Negative | 2965644 - 2966285 | 23593.3 |
| cell division protein yceg | E5284_RS14310 | Not Available | Negative | 2966275 - 2967297 | 38226.3 |
| aminodeoxychorismate lyase | E5284_RS14315 | Not Available | Negative | 2967300 - 2968109 | 29936.3 |
| beta-ketoacyl-acp synthase ii | E5284_RS14320 | Not Available | Negative | 2968238 - 2969479 | 42881.0 |
| acyl carrier protein | E5284_RS14325 | Not Available | Negative | 2969565 - 2969801 | 8639.99 |
| 3-oxoacyl-acp reductase fabg | E5284_RS14330 | Not Available | Negative | 2969957 - 2970691 | 25434.7 |
| acp s-malonyltransferase | E5284_RS14335 | Not Available | Negative | 2970704 - 2971633 | 32434.9 |
| beta-ketoacyl-acp synthase iii | E5284_RS14340 | Not Available | Negative | 2971649 - 2972602 | 33571.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

