Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS14250 | Not Available | Negative | 2952173 - 2952739 | 21093.3 |
| hypothetical protein | E5284_RS23380 | Not Available | Negative | 2952736 - 2953746 | 37203.7 |
| hypothetical protein | E5284_RS23385 | Not Available | Negative | 2953837 - 2954457 | 22748.1 |
| hth-type transcriptional regulator cbl | E5284_RS14260 | Not Available | Negative | 2954651 - 2955604 | 35763.1 |
| nitrogen assimilation transcriptional regulator nac | E5284_RS14265 | Not Available | Negative | 2955706 - 2956623 | 32662.8 |
| Trna-asn | Not Available | Not Available | Positive | 2956950 - 2957025 | Not Available |
| shikimate transporter | E5284_RS14275 | Not Available | Positive | 2957240 - 2958562 | 47892.1 |
| amp nucleosidase | E5284_RS14280 | Not Available | Positive | 2958681 - 2960135 | 54051.0 |
| aminopeptidase p family protein | E5284_RS14285 | Not Available | Positive | 2960151 - 2961929 | 66001.2 |
| pts glucose transporter subunit iibc | E5284_RS14290 | Not Available | Negative | 2961985 - 2963418 | 50516.3 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

