Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| very short patch repair endonuclease | E5284_RS14195 | Not Available | Negative | 2942418 - 2942885 | 17779.4 |
| dna cytosine methyltransferase | E5284_RS14200 | Not Available | Negative | 2942866 - 2944296 | 54401.1 |
| phosphohydrolase | E5284_RS14205 | Not Available | Negative | 2944370 - 2945065 | 26264.2 |
| porin ompc | E5284_RS14210 | Not Available | Positive | 2945465 - 2946640 | 42561.7 |
| Trna-ser | Not Available | Not Available | Positive | 2946811 - 2946900 | Not Available |
| dgsa anti-repressor mtfa | E5284_RS14220 | Not Available | Positive | 2946994 - 2947791 | 30515.9 |
| Trna-asn | Not Available | Not Available | Positive | 2947892 - 2947967 | Not Available |
| hypothetical protein | E5284_RS23325 | Not Available | Positive | 2948128 - 2948275 | 5413.63 |
| ankyrin repeat domain-containing protein | E5284_RS14240 | Not Available | Negative | 2948428 - 2950884 | 93404.2 |
| glycosyltransferase | E5284_RS14245 | Not Available | Negative | 2950964 - 2952172 | 45208.4 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

