Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar biosynthetic protein flio | E5284_RS14140 | Not Available | Positive | 2936217 - 2936594 | 13004.1 |
| flagellar type iii secretion system pore protein flip | E5284_RS14145 | Not Available | Positive | 2936594 - 2937331 | 26890.0 |
| flagellar biosynthesis protein fliq | E5284_RS14150 | Not Available | Positive | 2937341 - 2937610 | 9576.42 |
| flagellar biosynthetic protein flir | E5284_RS14155 | Not Available | Positive | 2937619 - 2938413 | 28874.8 |
| transcriptional regulator rcsa | E5284_RS14160 | Not Available | Positive | 2938695 - 2939318 | 23326.6 |
| protein dsrb | E5284_RS14165 | Not Available | Negative | 2939374 - 2939562 | 7047.34 |
| yodd family peroxide/acid resistance protein | E5284_RS14175 | Not Available | Positive | 2939726 - 2939953 | 8734.93 |
| yodc family protein | E5284_RS14180 | Not Available | Negative | 2940160 - 2940339 | 6605.79 |
| duf808 domain-containing protein | E5284_RS14185 | Not Available | Negative | 2940417 - 2941331 | 32358.7 |
| drug/metabolite exporter yeda | E5284_RS14190 | Not Available | Positive | 2941506 - 2942426 | 32351.0 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

