Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar hook-basal body complex protein flie | E5284_RS14090 | Not Available | Negative | 2927291 - 2927605 | 11202.6 |
| flagellar basal-body ms-ring/collar protein flif | E5284_RS14095 | Not Available | Positive | 2927822 - 2929492 | 61079.3 |
| flagellar motor switch protein flig | E5284_RS14100 | Not Available | Positive | 2929485 - 2930480 | 36852.3 |
| flagellar assembly protein flih | E5284_RS14105 | Not Available | Positive | 2930473 - 2931180 | 25796.4 |
| flagellar protein export atpase flii | E5284_RS14110 | Not Available | Positive | 2931180 - 2932550 | 49213.4 |
| flagellar export protein flij | E5284_RS14115 | Not Available | Positive | 2932572 - 2933015 | 17259.5 |
| flagellar hook length control protein flik | E5284_RS14120 | Not Available | Positive | 2933012 - 2934226 | 41096.2 |
| flagellar basal body-associated protein flil | E5284_RS14125 | Not Available | Positive | 2934331 - 2934798 | 17080.9 |
| flagellar motor switch protein flim | E5284_RS14130 | Not Available | Positive | 2934803 - 2935807 | 37908.6 |
| flagellar motor switch protein flin | E5284_RS14135 | Not Available | Positive | 2935804 - 2936217 | 14818.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

