Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagella biosynthesis regulatory protein fliz | E5284_RS14035 | Not Available | Negative | 2918165 - 2918716 | 21591.9 |
| rna polymerase sigma factor flia | E5284_RS14040 | Not Available | Negative | 2918774 - 2919493 | 27468.7 |
| flic/fljb family flagellin | E5284_RS14045 | Not Available | Negative | 2919656 - 2921152 | 51344.5 |
| flagellar filament capping protein flid | E5284_RS14055 | Not Available | Positive | 2921408 - 2922811 | 49608.1 |
| flagellar export chaperone flis | E5284_RS14060 | Not Available | Positive | 2922827 - 2923234 | 14499.2 |
| flagella biosynthesis regulatory protein flit | E5284_RS14065 | Not Available | Positive | 2923234 - 2923602 | 13680.5 |
| alpha-amylase | E5284_RS14070 | Not Available | Positive | 2923674 - 2925161 | 56509.9 |
| lipoprotein yedd | E5284_RS14075 | Not Available | Negative | 2925202 - 2925615 | 15130.3 |
| selenium metabolism membrane protein yede/fdht | E5284_RS14080 | Not Available | Positive | 2925801 - 2927006 | 44209.1 |
| sulfurtransferase-like selenium metabolism protein yedf | E5284_RS14085 | Not Available | Positive | 2927003 - 2927236 | 8639.5 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

