Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 2909710 - 2909785 | Not Available |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | E5284_RS13990 | Not Available | Negative | 2909937 - 2910485 | 20821.8 |
| excinuclease abc subunit uvrc | E5284_RS13995 | Not Available | Negative | 2910541 - 2912373 | 67966.0 |
| uvry/sira/gaca family response regulator transcription factor | E5284_RS14000 | Not Available | Negative | 2912370 - 2913026 | 23973.2 |
| duf2594 family protein | E5284_RS14005 | Not Available | Positive | 2913485 - 2913709 | 8220.92 |
| transcriptional regulator sdia | E5284_RS14010 | Not Available | Negative | 2913776 - 2914498 | 27926.5 |
| l-cystine abc transporter atp-binding protein tcyn | E5284_RS14015 | Not Available | Negative | 2914731 - 2915483 | 27717.9 |
| cystine abc transporter permease | E5284_RS14020 | Not Available | Negative | 2915480 - 2916148 | 24719.8 |
| d-cysteine desulfhydrase | E5284_RS14025 | Not Available | Negative | 2916170 - 2917156 | 35107.3 |
| cystine abc transporter substrate-binding protein | E5284_RS14030 | Not Available | Negative | 2917264 - 2918064 | 28913.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

